Predicting the spatio-temporal distribution of the invasive alien plant Andropogon virginicus, in the South Korean peninsula considering long-distance dispersal capacities.

The spread of invasive alien species is a major threat to biodiversity. Estimating the long-distance dispersal capacity of invasive alien plants is vital for understanding their population dynamics and community composition. We predicted the spatial-temporal distribution of the alien plant Andropogon virginicus, in the Korean peninsula under climate change scenario using Random Forest (RF) and Cellular Automaton (CA) methods. Land use, barriers to dispersal, long-distance dispersal frequency, and maximum long-distance dispersal range were considered in our analysis. Our results showed that, among the five selected environmental variables, annual mean temperature and Human Foot-Printing (HFP) were positively associated with the occurrence probability of A. virginicus. This suggests that A. virginicus is likely to spread to the disturbed northern part of the Korean Peninsula due to climate change and habitat preference. When comparing modeling results for dispersal to field survey data, the modeling raster sets drawn from the long-distance dispersal frequency of 0.05 and maximum long-distance dispersal distance of 30 km y-1 had the most similar spatial expansion among the six long-distance dispersal parameter sets. The dispersal directions were associated with the landscape. Specifically, seeds dispersed by wind (anemochorous seeds) could propagate into open landscapes more easily than in forests. Regarding A. virginicus management, this grass can quickly invade bare ground with their wind-dispersed seeds, therefore habitat destruction, such as excessive logging and weeding, should be restrained.

The cost of not acting: Delaying invasive grass management increases costs and threatens assets in a national park, northern Australia.

Globally, invasive grasses are a major threat to protected areas (PAs) due to their ability to alter community structure and function, reduce biodiversity, and alter fire regimes. However, there is often a mismatch between the threat posed by invasive grasses and the management response. We document a case study of the spread and management of the ecosystem-transforming invasive grass, Andropogon gayanus Kunth. (gamba grass), in Litchfield National Park; an iconic PA in northern Australia that contains significant natural, cultural and social values. We undertook helicopter-based surveys of A. gayanus across 143,931 ha of Litchfield National Park in 2014 and 2021-2022. We used these data to parametrise a spatially-explicit spread model, interfaced with a management simulation model to predict 10-year patterns of spread, and associated management costs, under three scenarios. Our survey showed that between 2014 and 2021-22 A. gayanus spread by 9463 ha, and 47%. The gross A. gayanus infestation covered 29,713 ha of the total survey area, making it the largest national park infestation in Australia. A. gayanus had not been locally eradicated within the Park's small existing 'gamba grass eradication zone', and instead increased by 206 ha over the 7-year timeframe. Our modelled scenarios predict that without active management A. gayanus will continue spreading, covering 42,388 ha of Litchfield within a decade. Alternative scenarios predict that: (i) eradicating A. gayanus in the small existing eradication zone would likely protect 18% of visitor sites, and cost ∼AU$825,000 over 5 years - more than double the original predicted cost in 2014; or (ii) eradicating A. gayanus in a much larger eradication zone would likely protect 86% of visitor sites and several species of conservation significance, and cost ∼AU$6.6 million over 5 years. Totally eradicating A. gayanus from the Park is no longer viable due to substantial spread since 2014. Our study demonstrates the value of systematic landscape-scale surveys and costed management scenarios to enable assessment and prioritisation of weed management. It also demonstrates the increased environmental and financial costs of delaying invasive grass management, and the serious threat A. gayanus poses to PAs across northern Australia.

Comparative uptake, translocation, and plant mediated transport of Tc-99, Cs-133, Np-237, and U-238 in Savannah River Site soil columns for the grass species Andropogon virginicus.

This study examines the ability of the grass species Andropogon virginicus to alter the subsurface transport and redistribution of a suite of radionuclides (99Tc, 133Cs (stable analog for 135Cs and 137Cs), 237Np, 238U) with varying chemical behaviors in a Savannah River Site soil via the use of vegetated and unvegetated soil columns. After an acclimation period, a small volume of solution containing all radionuclides was introduced into the columns via Rhizon© pore water sampling tubes. Plants were grown for an additional 4 weeks before shoots were harvested, and columns were prepared for sampling. Plant presence led to decreased radionuclide release from the columns, mainly due to radionuclide specific combinations of system hydrology differences resulting from plant transpiration as well as plant uptake. For the most mobile radionuclides, 99Tc followed by 237Np, plant presence resulted in significantly different soil concentration profiles between vegetated and unvegetated columns, including notable upward migration for 237Np in columns with plants. Additionally, plant uptake of 99Tc was the greatest of all the radionuclides, with plant tissues containing an average of 44 % of the 99Tc, while plant uptake only accounted for <2 % of 237Np and <0.5 % of 133Cs and 238U in the system. Although overall plant uptake of 133Cs and 238U were similar, the majority of 133Cs taken up by plants was associated with 133Cs already available in the aqueous phase while 238U uptake was mainly associated with the solid phase, meaning that plant activity resulted in a fraction of the native 238U being mobilized and thus, made available for plant uptake. Overall, this study quantified the influence of several plant-mediated physical and biogeochemical factors that have significant influence on radionuclide mobility and transport in this complex system which can be further utilized in future system or site-specific environmental transport and risk assessment models.

Pseudomonas cultivated from Andropogon gerardii rhizosphere show functional potential for promoting plant host growth and drought resilience.

BACKGROUND: Climate change will result in more frequent droughts that can impact soil-inhabiting microbiomes (rhizobiomes) in the agriculturally vital North American perennial grasslands. Rhizobiomes have contributed to enhancing drought resilience and stress resistance properties in plant hosts. In the predicted events of more future droughts, how the changing rhizobiome under environmental stress can impact the plant host resilience needs to be deciphered. There is also an urgent need to identify and recover candidate microorganisms along with their functions, involved in enhancing plant resilience, enabling the successful development of synthetic communities. RESULTS: In this study, we used the combination of cultivation and high-resolution genomic sequencing of bacterial communities recovered from the rhizosphere of a tallgrass prairie foundation grass, Andropogon gerardii. We cultivated the plant host-associated microbes under artificial drought-induced conditions and identified the microbe(s) that might play a significant role in the rhizobiome of Andropogon gerardii under drought conditions. Phylogenetic analysis of the non-redundant metagenome-assembled genomes (MAGs) identified a bacterial genome of interest - MAG-Pseudomonas. Further metabolic pathway and pangenome analyses recovered genes and pathways related to stress responses including ACC deaminase; nitrogen transformation including assimilatory nitrate reductase in MAG-Pseudomonas, which might be associated with enhanced drought tolerance and growth for Andropogon gerardii. CONCLUSIONS: Our data indicated that the metagenome-assembled MAG-Pseudomonas has the functional potential to contribute to the plant host's growth during stressful conditions. Our study also suggested the nitrogen transformation potential of MAG-Pseudomonas that could impact Andropogon gerardii growth in a positive way. The cultivation of MAG-Pseudomonas sets the foundation to construct a successful synthetic community for Andropogon gerardii. To conclude, stress resilience mediated through genes ACC deaminase, nitrogen transformation potential through assimilatory nitrate reductase in MAG-Pseudomonas could place this microorganism as an important candidate of the rhizobiome aiding the plant host resilience under environmental stress. This study, therefore, provided insights into the MAG-Pseudomonas and its potential to optimize plant productivity under ever-changing climatic patterns, especially in frequent drought conditions.

Bacterial but Not Fungal Rhizosphere Community Composition Differ among Perennial Grass Ecotypes under Abiotic Environmental Stress.

Environmental change, especially frequent droughts, is predicted to detrimentally impact the North American perennial grasslands. Consistent dry spells will affect plant communities as well as their associated rhizobiomes, possibly altering the plant host performance under environmental stress. Therefore, there is a need to understand the impact of drought on the rhizobiome, and how the rhizobiome may modulate host performance and ameliorate its response to drought stress. In this study, we analyzed bacterial and fungal communities in the rhizospheres of three ecotypes (dry, mesic, and wet) of dominant prairie grass, Andropogon gerardii. The ecotypes were established in 2010 in a common garden design and grown for a decade under persistent dry conditions at the arid margin of the species' range in Colby, Kansas. The experiment aimed to answer whether and to what extent do the different ecotypes maintain or recruit distinct rhizobiomes after 10 years in an arid climate. In order to answer this question, we screened the bacterial and fungal rhizobiome profiles of the ecotypes under the arid conditions of western Kansas as a surrogate for future climate environmental stress using 16S rRNA and ITS2 metabarcoding sequencing. Under these conditions, bacterial communities differed compositionally among the A. gerardii ecotypes, whereas the fungal communities did not. The ecotypes were instrumental in driving the differences among bacterial rhizobiomes, as the ecotypes maintained distinct bacterial rhizobiomes even after 10 years at the edge of the host species range. This study will aid us to optimize plant productivity through the use of different ecotypes under future abiotic environmental stress, especially drought. IMPORTANCE In this study, we used a 10-year long reciprocal garden system, and reports that different ecotypes (dry, mesic, and wet) of dominant prairie grass, Andropogon gerardii can maintain or recruit distinct bacterial but not fungal rhizobiomes after 10 years in an arid environment. We used both 16S rRNA and ITS2 amplicons to analyze the bacterial and fungal communities in the rhizospheres of the respective ecotypes. We showed that A. gerardii might regulate the bacterial community to adapt to the arid environment, in which some ecotypes were not adapted to. Our study also suggested a possible tradeoff between the generalist and the specialist bacterial communities in specific environments, which could benefit the plant host. Our study will provide insights into the plant host regulation of the rhizosphere bacterial and fungal communities, especially during frequent drought conditions anticipated in the future.

Evaluation of silage from maize stover, maize husk and Andropogon gayanus in equal level with Tephrosia bracteolata as feed for West African Dwarf sheep.

The study investigated the nutritive composition as well as acceptability of ensiled roughages comprising Andropogon gayanus (AG), maize husk (MH), maize stover (MS) and their mixtures in equal proportion with Tephrosia bracteolata (TB) by West African Dwarf (WAD) sheep. Seven treatment diets were formulated comprising AG: 100% Andropogon gayanus, MH: 100% maize husk, MS: 100% maize stover, TB: 100% Tephrosia bracteolata, AG + TB: 50% Andropogon gayanus + 50% Tephrosia bracteolata, MS + TB: 50% maize husk + 50% Tephrosia bracteolata, MS + TB: 50% maize stover + 50% Tephrosia bracteolata. The experiment was completely randomized in design. Significant variations were observed in the chemical composition of the plant materials before and after ensiling. It was revealed that Tephrosia bracteolata, prior to ensiling, had the highest crude protein (CP) content, lowest crude fibre (CF), neutral detergent fibre (NDF), acid detergent fibre (ADF) and acid detergent lignin (ADL). Similar trend was observed in the chemical composition of Tephrosia bracteolata after ensiling. Inclusion of Tephrosia bracteolata in the roughages improved their nutritional quality. All the silage treatments presented good physical characteristics. The acceptability of the silage by 12 WAD sheep ranked thus: TB > MS + TB > AG + TB > AG > MS > MH + TB > MH. Silage digestibility was highest (66.60%) in TB, closely followed by MH + TB (62.67%) and least in MS. It was concluded that WAD sheep production could be enhanced by feeding ensiled maize plant residues alone or in combination with Tephrosia bracteolata during the lean season.

Climate variability supersedes grazing to determine the anatomy and physiology of a dominant grassland species.

Grassland ecosystems are historically shaped by climate, fire, and grazing which are essential ecological drivers. These grassland drivers influence morphology and productivity of grasses via physiological processes, resulting in unique water and carbon-use strategies among species and populations. Leaf-level physiological responses in plants are constrained by the underlying anatomy, previously shown to reflect patterns of carbon assimilation and water-use in leaf tissues. However, the magnitude to which anatomy and physiology are impacted by grassland drivers remains unstudied. To address this knowledge gap, we sampled from three locations along a latitudinal gradient in the mesic grassland region of the central Great Plains, USA during the 2018 (drier) and 2019 (wetter) growing seasons. We measured annual biomass and forage quality at the plot level, while collecting physiological and anatomical traits at the leaf-level in cattle grazed and ungrazed locations at each site. Effects of ambient drought conditions superseded local grazing treatments and reduced carbon assimilation and total productivity in A. gerardii. Leaf-level anatomical traits, particularly those associated with water-use, varied within and across locations and between years. Specifically, xylem area increased when water was more available (2019), while xylem resistance to cavitation was observed to increase in the drier growing season (2018). Our results highlight the importance of multi-year studies in natural systems and how trait plasticity can serve as vital tool and offer insight to understanding future grassland responses from climate change as climate played a stronger role than grazing in shaping leaf physiology and anatomy.

Goat performance on pure Andropogon gayanus pastures or associated with legumes.

The objective of this study was to evaluate the grazing of goats in a grass monoculture system and in intercropping systems of grass + legumes. A randomized block design was adopted, with the treatments arranged in a split-plots scheme. The plots consisted of three cropping systems: monoculture-Andropogon gayanus cv. Planaltina; mixture I-A. gayanus cv. Planaltina + Stylosanthes cv. Campo Grande; and mixture II-A. gayanus cv. Planaltina + Calopogonium mucunoides. The subplots consisted of two grazing cycles. The highest (P = 0.04) total forage mass (TFM) was recorded in the mixture I (A. gayanus cv. Planaltina + Stylosanthes. cv. Campo Grande), which was 2.6 ± 0.1 tons DM/ha. The crude protein (CP) was lower in the monoculture which also showed the highest content of neutral detergent fiber (NDF). The grazing time in the monoculture was the longest (8.23 ± 1.14 h). The goats used a longer time for rumination (P < 0.01) in the mixture I. The lowest (P < 0.01) bite rate was found in mixture II in comparison to the other cropping systems. The bite rate was higher (P < 0.01) in grazing cycle II than in all the other cropping systems. In mixture I, the Stylosanthes cv. Campo Grande, and in mixture II, the C. mucunoides presented the lowest (P < 0.01) δ13C value in the forage. The highest forage intake occurred in the mixture systems (P < 0.01) in comparison to the monoculture. The mixture pastures presented better results for forage mass, nutritive value, and intake in comparison to the monoculture.

Sterile Spikelets Contribute to Yield in Sorghum and Related Grasses.

Sorghum (Sorghum bicolor) and its relatives in the grass tribe Andropogoneae bear their flowers in pairs of spikelets in which one spikelet (seed-bearing or sessile spikelet [SS]) of the pair produces a seed and the other is sterile or male (staminate). This division of function does not occur in other major cereals such as wheat (Triticum aestivum) or rice (Oryza sativa). Additionally, one bract of the SS spikelet often produces a long extension, the awn, that is in the same position as, but independently derived from, that of wheat and rice. The function of the sterile spikelet is unknown and that of the awn has not been tested in Andropogoneae. We used radioactive and stable isotopes of carbon, RNA sequencing of metabolically important enzymes, and immunolocalization of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) to show that the sterile spikelet assimilates carbon, which is translocated to the largely heterotrophic SS. The awn shows no evidence of photosynthesis. These results apply to distantly related species of Andropogoneae. Removal of sterile spikelets in sorghum significantly decreases seed weight (yield) by ∼9%. Thus, the sterile spikelet, but not the awn, affects yield in the cultivated species and fitness in the wild species.

Morphogenetic and structural characteristics of gamba grass subjected to nitrogen fertilization and different defoliation intensities / Características morfogênicas e estruturais do capim-andropógon submetido à adubações nitrogenadas e intensidades de desfolha

This study aimed to evaluate the morphogenetic, structural, and productive characteristics of Andropogon gayanus cv. 'Planaltina' subjected to different nitrogen fertilization levels and defoliation intensities. The experiment was done in a completely randomized design with a factorial arrangement of six nitrogen doses (0, 100, 200, 300, 400, and 500 kg N ha-1) and two defoliation intensities (15 and 30 cm). The production and structure data were grouped into rainy and dry periods, while morphogenesis data were compared only among different fertilization and defoliation intensities. The total dry forage biomass (TDFB), dry mass of leaves (DML), dry mass of stems (DMS), and dead forage dry mass (DFDM) were then determined. In addition to these variables, the morphogenetic characteristics of the plants and the numbers of tillers alive and dead were evaluated. There was no interaction (P>0.05) between the effects of nitrogen fertilization doses and the intensity of defoliation on TDFB, DML, DMS, and DFDM in both of the evaluated phases (rainy and dry). It was also observed that the rates of leaf elongation, leaf appearance, and leaf blade elongation increased with nitrogen fertilization. On the other hand, the culm elongation rate and phyllochron decreased as the dose applied increased. The defoliation intensity did not influence (P>0.05) the morphogenetic characteristics examined, nor did it affect the senescence rate of nitrogen in leaves and number of live leaves per tiller. The number of dead tillers increased linearly during the rainy period. Based on these results, to improve the efficiency of production of gamba grass it is recommended that it be managed with a defoliation intensity of 30 cm and nitrogen fertilization of 286.52 kg N ha-1 year-1.

Objetivou-se avaliar as características morfogênicas, produtivas e estruturais do Andropogon gayanus cv. Planaltina submetido a níveis de adubação nitrogenada e intensidades de desfolha. O delineamento experimental foi o inteiramente casualizado com arranjo fatorial 6x2, doses de nitrogênio (0, 100, 200, 300, 400 e 500 kg de nitrogênio ha-1) e intensidades de desfolhas (15 e 30 cm). Os dados de produção e estrutura foram agrupados em períodos chuvoso e seco e os de morfogênese analisados somente em função da adubação e intensidade de desfolha. Foi determinada a produção de biomassa de forragem seca total (BFST), massa seca de folhas (MSF), massa seca de colmos (MSC) e massa seca de forragem morta (MSFM). Além dessas variáveis foram avaliadas as características morfogênicas e de perfilhos vivos e mortos. Houve interação (P<0,05) entre as doses e intensidade de desfolhas para a MSFT, MSF, MSC e MSFM em ambas as fases de avaliação. Observou-se que as taxas de alongamento foliar, aparecimento foliar e comprimento da lâmina foliar aumentaram com a adubação nitrogenada. Por outro lado, a taxa de alongamento do colmo e Filocrono diminuíram com a aplicação das doses crescentes. As intensidades de desfolha não influenciaram (P>0,05) nas características morfogênicas, assim como a adubação na taxa de senescência foliar e número de folhas vivas por perfilho. O número de perfilhos mortos aumentou de forma linear durante o período chuvoso. Recomenda-se manejar o capim-andropógon com intensidade de desfolha de 30 cm e adubação nitrogenada de 286,52 kg de N ha-1 ano-1, visando a maior produção.

Interactions of cadmium and zinc in high zinc tolerant native species Andropogon gayanus cultivated in hydroponics: growth endpoints, metal bioaccumulation, and ultrastructural analysis.

Cadmium (Cd) and zinc (Zn) toxicity causes physiological disorders and harms plants, interfering with the rehabilitation of areas affected by mining activities. This study evaluated how the exposure to Zn and/or Cd affects the growth of native andropogon grass (Andropogon gayanus Kunth) plants originally found in areas contaminated with Cd and/or Zn due to zinc mining activities. Plants were cultivated for 7 weeks in a nutrient solution treated with Zn (142.3-854.0 µM) or Cd (0.9-13.3 µM) separately or combined with a molar ratio of 64:1 (Zn:Cd). A control treatment was grown in a complete Hoagland and Arnon solution (without Cd). Plant height, stem diameter, internode length, dry weight, Cd and Zn concentration, and accumulation in shoots/roots, as well as ultrastructure of roots and leaves were analyzed at the end of the experiment. The root dry weight was not significantly affected by the addition of the metals. Moreover, Zn provided higher shoot dry weight (up to 160%) relative to control. Andropogon grass tolerated both metals better separately than when applied together. Transmission electron microscopy analyses showed modifications such as vesiculation and vacuolation in the ultrastructure of andropogon tissues by Cd and/or Zn. The andropogon grass was tolerant to the doses tested, evidencing that it has potential for recovering areas contaminated with Zn and/or Cd.

Dead Rhizophagus irregularis biomass mysteriously stimulates plant growth.

Arbuscular mycorrhizal (AM) fungi establish symbiotic associations with many plant species, transferring significant amounts of soil nutrients such as phosphorus to plants and receiving photosynthetically fixed carbon in return. Functioning of AM symbiosis is thus based on interaction between two living partners. The importance of dead AM fungal biomass (necromass) in ecosystem processes remains unclear. Here, we applied either living biomass or necromass (0.0004 potting substrate weight percent) of monoxenically produced AM fungus (Rhizophagus irregularis) into previously sterilized potting substrate planted with Andropogon gerardii. Plant biomass production significantly improved in both treatments as compared to non-amended controls. Living AM fungus, in contrast to the necromass, specifically improved plant acquisition of nutrients normally supplied to the plants by AM fungal networks, such as phosphorus and zinc. There was, however, no difference between the two amendment treatments with respect to plant uptake of other nutrients such as nitrogen and/or magnesium, indicating that the effect on plants of the AM fungal necromass was not primarily nutritional. Plant growth stimulation by the necromass could thus be either due to AM fungal metabolites directly affecting the plants, indirectly due to changes in soil/root microbiomes or due to physicochemical modifications of the potting substrate. In the necromass, we identified several potentially bioactive molecules. We also provide experimental evidence for significant differences in underground microbiomes depending on the amendment with living or dead AM fungal biomass. This research thus provides the first glimpse into possible mechanisms responsible for observed plant growth stimulation by the AM fungal necromass.

Dosimetric modeling of Tc-99, Cs-137, Np-237, and U-238 in the grass species Andropogon Virginicus: Development and comparison of stylized, voxel, and hybrid phantom geometry.

This paper discusses the development, comparison, and application of three anatomically representative computational phantoms for the grass species Andropogon virginicus, an indigenous grass species in the Southeastern United States. Specifically, the phantoms developed in this work are: (1) a stylized phantom where plant organs (roots or shoots) are represented by simple geometric shapes, (2) a voxel phantom developed from micro-CT imagery of a plant specimen, and (3) a hybrid phantom resulting from the refinement of (2) by use of non-uniform rational basis spline (NURBS) surfaces. For each computational phantom, Monte Carlo dosimetric modeling was utilized to determine whole-organism and organ specific dose coefficients (DC) associated with external and internal exposure to 99Tc, 137Cs, 237Np, and 238U for A. virginicus. Model DCs were compared to each other and to current values for the ICRP reference wild grass in order to determine if noteworthy differences resulted from the utilization of more anatomically realistic phantom geometry. Modeled internal DCs were comparable with ICRP values. However, modeled external DCs were more variable with respect to ICRP values; this is proposed to be primarily due to differences in organism and source geometry definitions. Overall, the three anatomical phantoms were reasonably consistent. Some noticeable differences in internal DCs were observed between the stylized model and the voxel or hybrid models for external DCs for shoots and for cases of crossfire between plant organs. Additionally, uptake data from previous hydroponic (HP) experiments was applied in conjunction with hybrid model DCs to determine dose rates to the plant from individual radionuclides as an example of practical application. Although the models within are applied to a small-scale, hypothetical scenario as proof-of-principle, the potential, real-world utility of such complex dosimetric models for non-human biota is discussed, and a fit-for purpose approach for application of these models is proposed.

Post-treatment of paint industry effluents by filtration using Andropogon biochar (Andropogon gayanus Kunth cv. Planaltina).

This study evaluates the filtration potential of the biomass obtained from Andropogon grass (Andropogon gayanus Kunth cv. Planaltina) that was converted to biochar by pyrolysis. The biochar is used in filtration systems for the post-treatment of paint industry effluents. The biomass is characterized by elemental analysis (CHSN-O), determination of specific compounds (cellulose/hemicellulose/lignin), FTIR, and SEM. The produced biochar is characterized by SEM, TGA, and surface area analysis. The efficiency of the filters is evaluated by the following parameters: color, turbidity, removal of total solids (suspended and sedimentable), chemical oxygen demand (COD), and metals (Al, Cu, Zn, Co, Cd, and Cr(VI)). Over 99% removal of aluminum, cadmium, and hexavalent chromium is achieved. Moreover, almost 100% of COD and solids are removed, whereas turbidity and color are reduced by over 90%.

Selection of suitable reference genes for quantitive real-time PCR normalization in Miscanthus lutarioriparia.

Miscanthus lutarioriparia, which is found widespread in China, has attracted great attention as a most potential bioenergy plant for years. The quantitative real time PCR (RT-qPCR) has appeared as a sensitive and powerful technique to measure gene expression in living organisms during different development stages. In this study, we evaluated ten candidate genes, including 25S ribosomal RNA gene (25S rRNA), actin1 gene (ACT1), carotenoid-binding protein 20 gene (CBP20), glyceraldehyde-3-phosphate dehydrogenase gene (GAPDH), Ubiquitin gene (UBQ), eukaryotic elongation factor 1-αgene (eEF-1α), α-tubulin gene (α-TUB), ß-tubulin gene (ß-TUB), eukaryotic translation initiation factor 4α-1 gene (eIF-4α) and NAC domain protein gene(NAC) in a series of 30 M. lutarioriparia samples followed by statistical algorithms geNorm and Normfinder to analyze the gene expression stability. The results indicated that eIF-4αand UBQ were the most stable expressed genes while CBP20 showed as the least stable among all the samples. Based on above research, we recommend that at least two top-ranked reference genes should be employed for expression data normalization. The best genes selected in this study will provide a starting point to select reference genes in the future in other tissues and under other experimental conditions in this energy crop candidate.

Local adaptation, genetic divergence, and experimental selection in a foundation grass across the US Great Plains' climate gradient.

Many prior studies have uncovered evidence for local adaptation using reciprocal transplant experiments. However, these studies are rarely conducted for a long enough time to observe succession and competitive dynamics in a community context, limiting inferences for long-lived species. Furthermore, the genetic basis of local adaptation and genetic associations with climate has rarely been identified. Here, we report on a long-term (6-year) experiment conducted under natural conditions focused on Andropogon gerardii, the dominant grass of the North American Great Plains tallgrass ecosystem. We focus on this foundation grass that comprises 80% of tallgrass prairie biomass and is widely used in 20,000 km2 of restoration. Specifically, we asked the following questions: (a) Whether ecotypes are locally adapted to regional climate in realistic ecological communities. (b) Does adaptive genetic variation underpin divergent phenotypes across the climate gradient? (c) Is there evidence of local adaptation if the plants are exposed to competition among ecotypes in mixed ecotype plots? Finally, (d) are local adaptation and genetic divergence related to climate? Reciprocal gardens were planted with 3 regional ecotypes (originating from dry, mesic, wet climate sources) of Andropogon gerardii across a precipitation gradient (500-1,200 mm/year) in the US Great Plains. We demonstrate local adaptation and differentiation of ecotypes in wet and dry environments. Surprisingly, the apparent generalist mesic ecotype performed comparably under all rainfall conditions. Ecotype performance was underpinned by differences in neutral diversity and candidate genes corroborating strong differences among ecotypes. Ecotype differentiation was related to climate, primarily rainfall. Without long-term studies, wrong conclusions would have been reached based on the first two years. Further, restoring prairies with climate-matched ecotypes is critical to future ecology, conservation, and sustainability under climate change.

Interspecific genetic maps in Miscanthus floridulus and M. sacchariflorus accelerate detection of QTLs associated with plant height and inflorescence.

Miscanthus is recognized as a promising lignocellulosic crop for the production of bioethanol and bioproducts worldwide. To facilitate the identification of agronomical important traits and establish genetics knowledge, two genetic maps were developed from a controlled interspecific cross between M. floridulus and M. sacchariflorus. A total of 650 SSR markers were mapped in M. floridulus, spanning 19 linkage groups and 2053.31 cM with an average interval of 3.25 cM. The map of M. sacchariflorus comprised 495 SSR markers in 19 linkage groups covering 1684.86 cM with an average interval of 3.54 cM. The estimation on genome length indicated that the genome coverage of parental genetic maps were 93.87% and 89.91%, respectively. Eighty-eight bi-parental common markers were allowed to connect the two maps, and six pairs of syntenic linkage groups were recognized. Furthermore, quantitative trait loci (QTL) mapping of three agronomic traits, namely, plant height (PH), heading time (HT), and flowering time (FT), demonstrated that a total of 66 QTLs were identified in four consecutive years using interval mapping and multiple-QTL model. The LOD value of these QTLs ranged from 2.51 to 10.60, and the phenotypic variation explained varied from 9.50 to 37.10%. QTL cluster in syntenic groups MF19/MS7 contained six stable QTLs associated with PH, HT, and FT. In conclusion, we report for the first time the genetic mapping of biomass traits in M. floridulus and M. sacchariflorus. These results will be a valuable genetic resource, facilitating the discovery of essential genes and breeding of Miscanthus.

Amending potential of organic and industrial by-products applied to heavy metal-rich mining soils.

Mining activities promote the development of economies and societies, yet they cause environmental impacts that must be minimized so that their benefits overcome the likely risks. This study evaluated eco-friendly technologies based on the use of low-carbon footprint wastes and industrial by-products as soil amendments for the revegetation of Zn-mining areas. Our goal was to select adequate soil amendments that can be used to recover these areas, with a focus on low-cost materials. The amendments - limestone, sewage sludge, biochar, and composted food remains - were first characterized concerning their chemical composition and structural morphologies. Soil samples (Entisol, Oxisol, Technosol) from three different areas located inside an open-pit mine were later incubated for 60 days with increasing doses of each soil amendment, followed by cultivation with Andropogon gayanus, a native species. The amendments were able to change not only soil pH, but also the phytoavailable levels of Cd, Zn, and Pb. Limestone and biochar were the amendments that caused the highest pH values, reducing the phytoavailability of the metals. All amendments improved seed germination; however, the composted food remains presented low levels of germination, which could make the amendments unfeasible for revegetation efforts. Our findings showed that biochar, which is a by-product of the mining company, is the most suitable amendment to enhance revegetation efforts in the Zn-mining areas, not only because of its efficiency and cost, but also due to its low carbon footprint, which is currently the trend for any "green remediation" proposal.

Coexpression network revealing the plasticity and robustness of population transcriptome during the initial stage of domesticating energy crop Miscanthus lutarioriparius.

KEY MESSAGE: Coexpression network revealing genes with Co-variation Expression pattern (CE) and those with Top rank of Expression fold change (TE) played different roles in responding to new environment of Miscanthus lutarioriparius. Variation in gene expression level, the product of genetic and/or environmental perturbation, determines the robustness-to-plasticity spectrum of a phenotype in plants. Understanding how expression variation of plant population response to a new field is crucial to domesticate energy crops. Weighted Gene Coexpression Network Analysis (WGCNA) was used to explore the patterns of expression variation based on 72 Miscanthus lutarioriparius transcriptomes from two contrasting environments, one near the native habitat and the other in one harsh domesticating region. The 932 genes with Co-variation Expression pattern (CE) and other 932 genes with Top rank of Expression fold change (TE) were identified and the former were strongly associated with the water use efficiency (r ≥ 0.55, P ≤ 10-7). Functional enrichment of CE genes were related to three organelles, which well matched the annotation of twelve motifs identified from their conserved noncoding sequence; while TE genes were mostly related to biotic and/or abiotic stress. The expression robustness of CE genes with high genetic diversity kept relatively stable between environments while the harsh environment reduced the expression robustness of TE genes with low genetic diversity. The expression plasticity of CE genes was increased less than that of TE genes. These results suggested that expression variation of CE genes and TE genes could account for the robustness and plasticity of acclimation ability of Miscanthus, respectively. The patterns of expression variation revealed by transcriptomic network would shed new light on breeding and domestication of energy crops.

The Uptake and Translocation of 99Tc, 133Cs, 237Np, and 238U Into Andropogon Virginicus With Consideration of Plant Life Stage.

Hydroponic uptake studies were conducted to evaluate the uptake and translocation of Tc, Cs (stable analog for Cs), Np, and U into established and seedling Andropogon virginicus specimens under controlled laboratory conditions. Plant specimens were grown in analyte-spiked Hoagland nutrient solution for 24 h, 3 d, and 5 d. Translocation to shoots was greatest for Tc and Cs, likely due to their analogous nature to plant nutrients, while U (and Np to a lesser extent) predominantly partitioned to root tissue with less extensive translocation to the shoots. Plant age contributed significantly to differences in concentration ratios for all nuclides in shoot tissues (p ≤ 0.024), with higher concentration ratios for seedling specimens. Additionally, duration of exposure was associated with significant differences in concentration ratios of Cs and Tc for seedlings (p = 0.007 and p = 0.030, respectively) while plant part (root or shoot) was associated with significant differences in concentration ratios of established plants (p < 0.001 for both nuclides). Statistically significant increases in radionuclide uptake in seedling specimens relative to established plants under controlled conditions suggests that, in addition to geochemical factors, plant life stage of wild grasses may also be an important factor influencing radionuclide transport in the natural environment.